FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62045826
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT1779131128.67446877087268No Hit
TCACATCA1531915024.69005731344442Illumina PCR Primer Index 1 (100% over 8bp)
AGTGGAAC1405797022.657398420322426No Hit
CAGATGGG1382883122.28809235290058No Hit
GTCTCCTA1198440.1931540084581999No Hit
CAGATGGA1058050.17052718421380997No Hit
GGCTCCTT656660.10583467774286702No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)