FastQCFastQC Report
Wed 8 May 2024
EGAF00005395483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62085251
Total Bases496.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCGC1774153028.576078399038767No Hit
GGCTAGCG1767065828.461925683444527No Hit
TCTCGTTT1506381024.26310558042199No Hit
CAAGTAAA1055868617.006754148420853No Hit
TCTCGTTA2019210.3252318332416825No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)