FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84496680
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT2397136428.369592746129197No Hit
GCACAATG2108854824.957842130602053No Hit
CTTGGTAC2081761424.637197579833906No Hit
AAGTTGCA1720285920.359212930022814No Hit
TGCACCGA1541890.18247935895232806No Hit
GCACAATA1055510.12491733403016544No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)