FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59420316
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGGCTC1960515232.99402177531335No Hit
CGTCCTAG1599630226.920593959816706No Hit
GAGTTAGT1408907923.710878615993895No Hit
TTAAAGCA879658114.803995656973617No Hit
GAGGTAGT1441650.24261903958908598No Hit
ACCGGCTA844210.14207430334096507No Hit
GTGTTAGT767550.12917299194437135No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)