FastQCFastQC Report
Fri 10 May 2024
EGAF00005395492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49886746
Total Bases399 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTGCC1495124629.970377302219713No Hit
TGATGCAT1384735427.757581141892878No Hit
GCTACTGA1103414322.1183859135651No Hit
ATGGAATG933354618.709470447320818No Hit
CACCTGCA839770.16833529290525384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)