FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49439120
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGATTA1376124727.834732899776533No Hit
TGGAGGCT1302346126.342420738880467No Hit
GAATCCGC1136942522.996819118139644No Hit
ATTCTAAG1046636421.170206913068032No Hit
GAATCCGA884710.17894938259418858No Hit
CCCGATAA718760.14538284662024728No Hit
GTATCCGC514370.1040410913462861No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)