FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45137701
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGCAT1336913929.61856431279032No Hit
AGGCCGTG1117485324.757248934765197No Hit
TTTGTACA1030193522.823348933965423No Hit
CCATATGC942780520.88676381634944No Hit
CTTGTACA1280070.2835922015611739No Hit
TTGGTACA1064500.23583389858513173No Hit
GTTGTACA464030.10280319770827495No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)