FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45158513
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG1394609830.882544781755765No Hit
CGTTTGAT1023279322.65972088142052No Hit
GTAGCACA1016616122.512169521613785No Hit
TCCAATGC995873122.052831987625456No Hit
CGGTTGAT1231930.27280127669394255No Hit
CAGCGCTG731690.1620270357440689No Hit
AATCGCTG699290.1548523087994505No Hit
AAGCGCTA484250.10723338033739065No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)