FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45639838
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGAGAGT1392897830.519341457785192No Hit
AGTCCCAC1213617426.591185534006495No Hit
TACGTTCA952824120.87702633826176No Hit
CTATAGTG935329720.493712094245385No Hit
CTATAGTA527200.11551311816663327No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)