FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53827322
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC1389621125.81627783748929No Hit
CATCTCCA1316958724.46636115391362No Hit
GCGGATAG1284824223.869368793788404No Hit
TTATCGTT1270872223.61016957150497No Hit
GTATCGTT1611010.2992922441878123No Hit
GCGGCTAG1053230.1956682890521657No Hit
CATCTCAA1025710.1905556438419879No Hit
GCGGATAA901730.16752273129991493No Hit
TTATCGTA871310.16187132623837389No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)