FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88273921
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC2517984828.52467378219214No Hit
GGCGAGTA2292346825.968562107941256No Hit
CAAATACG1942470222.00502909573939No Hit
ACTTCTAT1822750220.648796148978132No Hit
GTGCGCGC5865460.6644612512454273No Hit
CCTTCTAT4324290.4898717481916318No Hit
TCTTCTAT3485660.39486860451117833No Hit
TTGCGCGA952950.10795374094688735No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)