FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51337311
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT1650488232.14987633458246No Hit
GGATGGGC1224841623.85870190980591No Hit
CCGATTAA1196976923.31592513678794No Hit
AATCAATG974438318.98109349747594No Hit
TTCGCCCA846560.1649015079889946No Hit
CCGATAAA766920.14938842433722327No Hit
CCCATTAA519890.10126942566197127No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)