FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40948464
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGTCGC1374878333.575821061322344No Hit
CCCAATAG947098723.129040933012774No Hit
GTGTCGCT895056121.858111698646375No Hit
TATCGATA789992319.292354897609833No Hit
CCCACTAG1016540.24824862783619916No Hit
GATCGATA666160.16268253676133004No Hit
TATCGTTA664740.1623357594072393No Hit
CCCAATAA472990.11550860613477468No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)