FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43394720
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCCGGA1198158927.610707016890533No Hit
GCCATTCC1179196427.173729891562843No Hit
CAAGAATT1034257023.833706036126053No Hit
AGTTGCAG842636019.417938403566147No Hit
AGTTGCAA1005840.23178856782576315No Hit
GCCATTCA906550.20890790400306763No Hit
TTGCCGCA823440.1897558043927925No Hit
CAAGAATA590040.13597045907889255No Hit
TTGCCGAA445970.1027705674791772No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)