FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005396050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9044002
Sequences flagged as poor quality0
Sequence length28
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTACCA94700.020.9437831
CCGTAGA80900.020.939664
AGATACA81150.020.9290228
TTGAGAC88100.020.77627210
ATCTTGA88100.020.7762727
GAATGTG110150.020.7621442
CCCAGCT93200.020.73700510
GGAGCGA62250.020.7275929
TAGATAC81550.020.7184587
TGAGCCG82200.020.7161251
GCGACCA85550.020.702141
GGACGCC65200.020.7013722
AATGTGT110400.020.6850073
GAGGTGA85250.020.6846681
AGTGGTT115300.020.6743452
GAACCTA59250.020.6640851
CGTTGCT112350.020.64874610
ATAACGC85400.020.6483351
TCCTTAA115200.020.6248828
TCCGTTG128750.020.6243488
Produced by FastQC (version 0.11.5)