FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005396329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11410737
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTGAAC36000.017.5877441
ATGCGAT29350.017.278611
GGCGACT28650.017.0723481
CAATGGA43800.017.0310128
CTCGAAA31350.016.8782391
GATGAAA30500.016.7910981
CTGCCTA36100.016.7909161
GACCTGG35350.016.7227231
GGATTAC37400.016.635191
GGGAATG38800.016.6278821
CCTACCA37950.016.5522421
TGAGCAT30550.016.5344261
CCGGGAT27200.016.4011731
CGCTTCA27400.016.3544671
TTTACTG33000.016.3071231
GCGCGAT18200.016.2128581
ATAACGC29350.016.1880471
CGCTGGA28100.016.1606371
AGCTTGA28450.016.1376171
CACCGAA17200.016.1037528
Produced by FastQC (version 0.11.5)