FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49477184
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAGCC1389701028.087714126980224No Hit
TGTAGCGG1302477226.32480458063256No Hit
GCCTTTAT1137499922.990392905141892No Hit
AAAGCATA1118040322.59708838724532No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)