FastQCFastQC Report
Thu 9 May 2024
EGAF00005396549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50387247
Total Bases403 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAGCC1415324428.088940838541944No Hit
TGTAGCGG1325146126.299235995171554No Hit
GCCTTTAT1160072723.02314115315727No Hit
AAAGCATA1138181522.588682013129237No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)