FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48810403
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAAGGA1567505132.1141601719617No Hit
TCATCCTT1223180525.059832019825773No Hit
CAGCTTAC1063275121.78378039615858No Hit
ATTGGACG1027079621.042227412053943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)