FastQCFastQC Report
Wed 8 May 2024
EGAF00005396555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49728835
Total Bases397.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAAGGA1594768032.06928133345573No Hit
TCATCCTT1248193325.09999077999716No Hit
CAGCTTAC1084633621.810959375983774No Hit
ATTGGACG1045288621.01976851056334No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)