FastQCFastQC Report
Thu 9 May 2024
EGAF00005396564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49943107
Total Bases399.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTCACT1340519926.840939231113513No Hit
GAGCACGC1251784625.064211563769952No Hit
CGAAGTTG1201996124.067307226200406No Hit
TTCGTGAA1200010124.02754197891613No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)