FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40711365
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTCCA1209730729.71481550667731No Hit
TCTGCAGG1100666927.0358633271078No Hit
GTATGTAT886323221.770903530255005No Hit
AACAAGTC874415721.478417635959886No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)