FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40123884
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGACC1093438027.2515492268894No Hit
GCCTCCGT1040104225.92232097969379No Hit
AGTCTGTA996967124.84722316513526No Hit
CAGAATAG881879121.97890662828155No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)