FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37479434
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACGTCA1237827433.02684346834053No Hit
ATGTCCAG1164737731.07671529938259No Hit
TACGAGTT1079797228.810392387462414No Hit
GCTATAGC26558117.086048844814466No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)