FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39223995
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTGGG1183541830.173922875525555No Hit
ACACCTAA1101133728.072961461472758No Hit
GACAAACC953575424.311021863020326No Hit
TTGGGCTT684148617.442093799981365No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)