FastQCFastQC Report
Wed 1 May 2024
EGAF00005396593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences242700089
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCGGC6919285228.50961130055457No Hit
TCCGGAAG6221365025.633962581694806No Hit
GTAATCTT5619888723.155692785922298No Hit
CAGCATCA5236339621.57535096742383No Hit
GGAATCTT6036380.2487176673429238No Hit
GTAATCTA3017910.12434729679888994No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)