FastQCFastQC Report
Sat 25 May 2024
EGAF00005396595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1054131685
Total Bases8.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG30048552128.505501283741413No Hit
TTGGCATA26891478025.510548997490762No Hit
GGTAACGC26264292824.915570961136606No Hit
CCACTTAT21438196020.337303493538382No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)