FastQCFastQC Report
Wed 15 May 2024
EGAF00005396599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445030527
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG13895222131.223076299213066No Hit
GGACACGT13119922929.48095041579024No Hit
TACTCTTC10126654422.75496575092252No Hit
ATGAGAAA6374513714.323767277205231No Hit
AGGAGAAA53573501.2038162946066844No Hit
TACTCTTA5230360.11752811734643094No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)