FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123185994
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCTGT3621958429.402355595718134No Hit
CCTAGACC3376073427.40630886982168No Hit
TAGCTCTA2886863723.434999436705443No Hit
GGAGAGAG2051511516.65377234363186No Hit
GGAGCGAG25507642.0706607278746314No Hit
CCTAGACA1646950.13369620575533936No Hit
GGCGAGAG1562620.126850459963817No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)