FastQCFastQC Report
Mon 6 May 2024
EGAF00005396606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164934480
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC5869634235.587672147145945No Hit
TTTACATG3786076422.95503281060455No Hit
ACGCGGGT3743039522.694099499389093No Hit
GAATTCCA2960585817.950072052853958Illumina Small RNA Adapter 2 (100% over 8bp)
TTTACATA1687630.10232123689358345No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)