FastQCFastQC Report
Wed 1 May 2024
EGAF00005396611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205970836
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCGGC5922422228.7536930713822No Hit
CAGCATCA5136784524.939377825315038No Hit
TCCGGAAG5008368424.31591043306733No Hit
GTAATCTT4323685520.99173642233505No Hit
GTAATCTA2524750.12257803332895148No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)