FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59151605
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG1882088331.818042807122477No Hit
ACGACATT1451634924.54092158615138No Hit
GTATGTCA1339955322.652898429383278No Hit
TGTCAGAC1195839720.21652159734296No Hit
CACGTCGA1016080.17177555875280137No Hit
ACGACATA789750.13351286072457375No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)