FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111975425
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCGGC3054634327.27950619522096No Hit
TCCGGAAG2988784926.691436089659852No Hit
GTAATCTT2637146723.5511202569671No Hit
CAGCATCA2413231621.551439523449005No Hit
TCCGGCAG1450950.12957753900018687No Hit
GTAATCTA1342320.11987630321563861No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)