FastQCFastQC Report
Wed 1 May 2024
EGAF00005396635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences220652532
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG7083380432.10196744989086No Hit
GAAGGAAC6371312528.8748669333194No Hit
TTTCATGA6259993228.370366490967797No Hit
ACGTCCCT204933599.287615607329627No Hit
TTACATGA7848710.35570450648624324No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)