FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116188626
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG3408096429.33244429622569No Hit
GGACACGT3407048429.323424480465064No Hit
TACTCTTC2558858022.02330889083756No Hit
ATGAGAAA1872419016.115338174323533No Hit
AGGAGAAA20092281.7292811432334176No Hit
ATGGGAAA3370780.29011273444269836No Hit
ATGAGTAA1440850.12400955666693227No Hit
TACTCTTA1286850.11075524724769531No Hit
CTGAGAAA1191140.10251778001058383No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)