FastQCFastQC Report
Wed 1 May 2024
EGAF00005396639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166127558
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCTGT4697977828.279340625713644No Hit
CCTAGACC4296001025.859652978225323No Hit
TAGCTCTA4073781624.52200976793989No Hit
GGAGAGAG2907468417.50142140775945No Hit
GGAGCGAG44263052.6644014113540395No Hit
GGCGAGAG3145890.18936593289356604No Hit
CCTAGACA1994780.12007520149065214No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)