FastQCFastQC Report
Wed 8 May 2024
EGAF00005396642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64074950
Total Bases512.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT1971029830.761316239809783No Hit
ACAAGGTA1656871825.85833933541891No Hit
TACTATAG1379441421.528559913039338No Hit
GTGGTACC1321150320.61882685823399No Hit
TACTCTAG1183130.1846478225890149No Hit
CGTCCCGA715680.1116941956255916No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)