FastQCFastQC Report
Fri 10 May 2024
EGAF00005396646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115104669
Total Bases920.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCACT3581699931.116895006231243No Hit
GTCGATGC2784149324.187978856009742No Hit
TGATTCTA2483119121.57270527401456No Hit
ACTAGGAG2318719320.144441751533122No Hit
ACTCGGAG21458541.8642632124679495No Hit
ACGAGGAG3112170.2703773901647726No Hit
CAGCCACA1197560.10404095771301858No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)