FastQCFastQC Report
Sun 5 May 2024
EGAF00005396649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382242272
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC15192507939.74575554008846No Hit
GGTTTACT8277773721.655830101386588No Hit
CTAAACGG7452611919.49708979335493No Hit
AACCGTAA7001497218.316909752985143No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)