FastQCFastQC Report
Wed 1 May 2024
EGAF00005396652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences210202744
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC6623516831.510134805852015No Hit
TCAGCCGT5543129026.37039314767461No Hit
GGTCAATA4926736523.438021817640973No Hit
ATCTTTAG3730087517.745189377737145No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)