FastQCFastQC Report
Thu 16 May 2024
EGAF00005396660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences579420524
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG19810313334.18987156899537No Hit
TTTCATGA17159601029.615107317116713No Hit
GAAGGAAC16895058629.158543579654072No Hit
ACGTCCCT349966036.0399315437435215No Hit
CGCATGTA6193050.10688351108529251No Hit
TTTCATAA5895730.10175217749104103No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)