FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103846316
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATCCG3160251530.432003962470848No Hit
CCTCATTC2756498526.544018181636797ABI Solid3 Adapter A (100% over 8bp)
TAATGGGA2241304921.582902372771702No Hit
GTGGCAAT2134517420.554579904404118No Hit
TAATGGAA2199830.21183515070481654No Hit
AGCATCCA1240080.11941492464691766No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)