FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127920678
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC3946843530.853835061756ABI Solid3 Adapter A (100% over 8bp)
CCGGGTAT3454494527.004973347624063No Hit
TAACAAGG3011828423.5444999752112No Hit
ATCATGCA2243415617.537552451058772No Hit
ATCATGAA1478370.1155692748908038No Hit
GGTTCCTA1409790.11020814007880729No Hit
TAACAAGA1334050.1042872834054241No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)