FastQCFastQC Report
Thu 2 May 2024
EGAF00005396670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences310186600
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT9691479531.244030206333868No Hit
ACAAGGTA8331315426.85904355636253No Hit
TACTATAG6553822621.128645144567816No Hit
GTGGTACC6095258819.650296950287345No Hit
CGTCCCGA3797400.12242308339560767No Hit
TACTCTAG3639900.1173454946151768No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)