FastQCFastQC Report
Sun 5 May 2024
EGAF00005396672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365049373
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGAC10675992229.245337725864278No Hit
CTAGACCT9295056425.462463676112108No Hit
ACTTCATA8443686623.130259149904088No Hit
TGCCGTGG7743189421.211348307123377No Hit
CTAGACCA5086980.13935046534102663No Hit
TGCCGTGA4556570.12482064994534314No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)