FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101664929
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCACT3275514832.218729036834326No Hit
GTCGATGC2523271724.819490111481805No Hit
ACTAGGAG2075159720.411755758959906No Hit
TGATTCTA2047214820.136883192039605No Hit
ACTCGGAG13878191.3650912007227192No Hit
ACGAGGAG1388250.13655151423948764No Hit
CAGCCACA1291940.12707823757000805No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)