FastQCFastQC Report
Mon 6 May 2024
EGAF00005396675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences360675887
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC14544331340.32521115003178No Hit
CATCACTT10502130029.117915498465248No Hit
ACAATTCA7879235021.84574928348343No Hit
GTGTGGAG232592396.448792347462917No Hit
GTGGGGAG41781761.1584295348249882No Hit
CATCACTA6732770.18667092097565147No Hit
GGGTGGAG5461110.15141322713375624No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)