FastQCFastQC Report
Wed 15 May 2024
EGAF00005396678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503317481
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCGAT14677836329.162182626436532No Hit
CCCTAACA12157057524.153855089328797No Hit
GAAGGCTG11645038223.1365661627No Hit
TGGATTGC11357450222.565181279686172No Hit
TGGATTGA8269480.16429947919889554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)