FastQCFastQC Report
Sun 5 May 2024
EGAF00005396682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149793648
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC5345435235.68532625629092No Hit
GGTTTACT3453913623.057810835877365No Hit
CTAAACGG3046262020.336389697912956No Hit
AACCGTAA3013414420.117104031006708No Hit
TCGGCGTA1511020.10087343623542701No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)