FastQCFastQC Report
Wed 1 May 2024
EGAF00005396686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200903866
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGTG5840717929.07220262252196No Hit
GCGTACAC5355706926.658057939014473No Hit
CGACTTGA4434603822.073262641944382No Hit
TACAGACT4301769821.412080741144123No Hit
CGACTTAA2097520.10440416313342621No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)